Source code for qcportal.gridoptimization.dataset_models
from typing import Dict, Any, Union, Optional, Iterable
try:
from pydantic.v1 import BaseModel, Extra
except ImportError:
from pydantic import BaseModel, Extra
from typing_extensions import Literal
from qcportal.dataset_models import BaseDataset
from qcportal.gridoptimization.record_models import (
GridoptimizationRecord,
GridoptimizationSpecification,
)
from qcportal.metadata_models import InsertMetadata
from qcportal.molecules import Molecule
[docs]
class GridoptimizationDatasetNewEntry(BaseModel):
class Config:
extra = Extra.forbid
name: str
initial_molecule: Union[Molecule, int]
additional_keywords: Dict[str, Any] = {}
additional_optimization_keywords: Dict[str, Any] = {}
attributes: Dict[str, Any] = {}
comment: Optional[str] = None
[docs]
class GridoptimizationDatasetEntry(GridoptimizationDatasetNewEntry):
initial_molecule: Molecule
[docs]
class GridoptimizationDatasetSpecification(BaseModel):
class Config:
extra = Extra.forbid
name: str
specification: GridoptimizationSpecification
description: Optional[str] = None
[docs]
class GridoptimizationDatasetRecordItem(BaseModel):
class Config:
extra = Extra.forbid
entry_name: str
specification_name: str
record_id: int
record: Optional[GridoptimizationRecord]
[docs]
class GridoptimizationDataset(BaseDataset):
dataset_type: Literal["gridoptimization"] = "gridoptimization"
# Needed by the base class
_entry_type = GridoptimizationDatasetEntry
_new_entry_type = GridoptimizationDatasetNewEntry
_specification_type = GridoptimizationDatasetSpecification
_record_item_type = GridoptimizationDatasetRecordItem
_record_type = GridoptimizationRecord
[docs]
def add_specification(
self, name: str, specification: GridoptimizationSpecification, description: Optional[str] = None
) -> InsertMetadata:
spec = GridoptimizationDatasetSpecification(name=name, specification=specification, description=description)
return self._add_specifications(spec)
[docs]
def add_entries(
self, entries: Union[GridoptimizationDatasetNewEntry, Iterable[GridoptimizationDatasetNewEntry]]
) -> InsertMetadata:
return self._add_entries(entries)
[docs]
def add_entry(
self,
name: str,
initial_molecule: Union[Molecule, int],
additional_keywords: Optional[Dict[str, Any]] = None,
additional_optimization_keywords: Optional[Dict[str, Any]] = None,
attributes: Optional[Dict[str, Any]] = None,
comment: Optional[str] = None,
):
if additional_keywords is None:
additional_keywords = {}
if additional_optimization_keywords is None:
additional_optimization_keywords = {}
if attributes is None:
attributes = {}
ent = GridoptimizationDatasetNewEntry(
name=name,
initial_molecule=initial_molecule,
additional_keywords=additional_keywords,
additional_optimization_keywords=additional_optimization_keywords,
attributes=attributes,
comment=comment,
)
return self.add_entries(ent)